CellRank for directed single-cell fate mapping | Nature Methods
Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut
Single cell sequencing reveals gene expression signatures associated with bone marrow stromal cell subpopulations and time in culture | Journal of Translational Medicine | Full Text
Millefy: visualizing cell-to-cell heterogeneity in read coverage of single- cell RNA sequencing datasets | BMC Genomics | Full Text
Trajectory Analysis with Diffusion Pseudotime - Danh Truong, PhD
Fig. S14. Diffusion map and UMAP analysis of mouse small intestine,... | Download Scientific Diagram
Current best practices in single‐cell RNA‐seq analysis: a tutorial | Molecular Systems Biology
a) ISOMAP and diffusion map plots of the down-sampled subsets. Cells... | Download Scientific Diagram
Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut
JEFworks Lab
A single-cell molecular map of mouse gastrulation and early organogenesis
Frontiers | Meeting the Challenges of High-Dimensional Single-Cell Data Analysis in Immunology
Diffusion pseudotime robustly reconstructs lineage branching | Nature Methods
Adult haematopoiesis
Dynamo: Mapping Vector Field of Single Cells — dynamo 1.1.0 documentation
Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury | eLife
A single‐cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast | The EMBO Journal
Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo | Science
Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process | PLOS Computational Biology
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis | Science
A spatially resolved single cell atlas of human gastrulation - preLights
Single cell RNA-seq identifies the origins of heterogeneity in efficient cell transdifferentiation and reprogramming | eLife
Reconstructing blood stem cell regulatory network models from single-cell molecular profiles | PNAS
16 Functional Pseudotime Analysis | ANALYSIS OF SINGLE CELL RNA-SEQ DATA
